Wade Johnson

Assistant Professor of Chemistry

514 University Ave, Selinsgrove, PA 17870
Phone: (570) 372-4224
Fax: (570) 372-2751
E-mail: johnsonw@susqu.edu

B.S. in Chemistry from Hampden-Sydney College
M.S. in Inorganic Chemistry from Iowa State University
Ph.D. in Biochemistry from Iowa State University
Post-Doc in Biophysics at Pennsylvania State University

 

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The following is an abridged version of my research with the most detail pertaining to recent advances by the undergraduates here at Susquehanna University. More background can be found in my CRC review, which also contains pertinent references in the literature. A useful chapter covering the photosynthetic light reactions (general reference) was recently written by Dr. John Golbeck. Several useful references are also given at the end of this page.

Photosynthesis is an important process that converts solar energy into chemical energy, thereby fueling the living world directly or indirectly. In oxygenic photosynthesis, cyanobacteria and the chloroplasts of higher plants and algae sequester light through photosynthesis to release oxygen from water and produce carbohydrates from carbon dioxide reduction. In the light driven reactions of photosynthesis, photosystem I (PSI) and photosystem II (PSII) capture photons to utilize the energy for electron transfer from water to NADP+ through three membrane bound complexes: PSII, cytochrome b6f and PSI. This process produces NADPH and a proton gradient across the thylakoid membranes that is used by ATP synthase to produce ATP. These products, ATP and NADPH, are used to reduce carbon dioxide in the production of carbohydrates (sugars).

 

From Voet and Voet, Biochemistry, 3rd Edition.

Photosystem I (PSI) is a well-characterized photosynthetic reaction center in cyanobacteria and higher plants. PSI catalyzes the photooxidation of plastocyanin in the thylakoid lumen and the photoreduction of ferredoxin in the cyanobacterial cytoplasm (or chloroplast stroma). PSI contains at least eleven proteins, with PsaA and PsaB as a heterodimeric core. Surrounding PsaA/PsaB are 6 small subunit proteins, that serve various identified or unknown functions. In addition to light-harvesting chlorophyll a (Chl a) molecules, PsaA/PsaB is imbedded with the P700 reaction center and a series of cofactors (A0, A1, FX) that act as intermediate electron acceptors and provide a charge separation from the initial P700 reaction center. P700 is comprised of a dimer of Chl a molecules. The electron acceptor cofactors include a molecule of chlorophyll a, A0, phylloquinone, A1 and a [4Fe-4S] iron sulfur protein, FX. PSI also contains three overlapping peripheral proteins (PsaC, PsaD and PsaE). PsaC is a prerequisite for PsaD and PsaE binding and contains the two terminal electron transfer [4Fe-4S] iron sulfur clusters FA and FB . FA and FB act as an electron shuttle from the PsaA/PsaB core cofactors to docked ferredoxin. PsaD provides a ferredoxin docking site, with PsaE assisting in the interaction of PSI with ferredoxin .

 

All well-characterized photosynthetic reaction centers contain a bound quinone molecule. Type II reaction centers, PS II, contain two plastoquinone: one that functions as a bound secondary electron acceptor and the other that functions as mobile terminal electron acceptor. Type I reaction centers, such as PS I, contain two bound phylloquinone (PhQ, vitamin K1, 2-methyl-3-phytyl-1,4-naphthoquinone, labeled QK-A and QK-B, above). Phylloquinone becomes neither protonated as part of the electron transfer process nor diffuses from the PSI complex as part of its normal function. This molecule acts as an intermediate in the electron transfer from the primary acceptor A0, a chlorophyll a to FX, an iron-sulfur cluster. PhQ acts as both a physical and energetic bridge for the electron between the primary acceptor and the terminal iron sulfur clusters. Phylloquinone plays an important role as a participant in the early stages of electron transfer in PS I. Yet the structure function relationship of phylloquinone in PSI is not fully understood. The primary objective of this research is to probe the interaction of quinone like molecules in PS I. Specifically, we will incorporate foreign quinones into PSI and characterize the physiological and bioenergetic aspects of PS I. The system of study is a Synechocystis sp PCC 6803.

Dr. Johnson mutationally disabled several of the genes (menA, menB, menD, menE) in the phylloquinone biosynthetic pathway. Two mutants of note are menA (phytyl transferase) and menB (DHNA synthase). The menA mutant is incapable of attaching the phytyl tail to the quinone, which is important for successful quinone incorporation into PS I. The menB mutant prevents the second ring closure, but allows the phytyl transfer to occur. These mutant cells were shown to lack phylloquinone and the ability to grow at high light. All of the men mutants(menA, menB, menD, menE) utilize plastoquinone as an alternative to phylloquinone. However, they were shown to re-incorporate phylloquinone into PS I by simple addition to the growth medium. The menB mutant has the capacity to modify quinone-like molecules in vivo and to incorporate them intact into PS I. Only phytylated quinones grow at high light. The full extent of the incorporation of these quinone-like molecules in to PS I has not been adequately explored. The CRC Review provides greater detail on the physiological and energetic changes in the mutants.

The focus this research on the menA and menB mutants (menB18), which will not grow at high light levels. Previously, the Golbeck laboratory showed that a series of anthraquinones added to the growth medium allows the menB18 cells to grow at high light (Figure 1). Surprisingly, the menA mutant with anthraquinones added to the growth media has been found to grow at high light (Figure 2). The growth rates approach that of wild type for both the menA and menB18 cells supplemented with anthraquinones. The implication is that the phytyl tail is not attached, and the the unmodified anthraquinones are incorporated into the quinone binding site of PS I. This is the first example of a non-tailed quinone acting as a secondary electron acceptor in vivo.

Figure 1. Log phase menB18 mutant grown at high light (120 mE) supplemented with 9,10-anthraquinones (AQ): no added quinone; AQ; 1-CH 3NH 2-AQ; 2,3-(CH 3) 2-AQ; 1-NH 2-AQ.

Figure 2. Log phase menA mutant grown at high light (120 mE) supplemented with 9,10-anthraquinones (AQ): no added quinone; AQ; 1-CH3NH 2-AQ; 2,3-(CH3) 2-AQ; 1-NH2-AQ.

Wild type and menB (and menA) show back reaction times of 100 ms and 3 ms, respectively (Figure 3). The menB mutant supplemented with 1-NH2-CH3-9,10-AQ shows a back reaction time of 63 ms (the kinetic major phase). Transient EPR studies (Figure 4) are also consistent with the in vitro incorporation of 9,10-anthraquinone 3. This experiment was performed at Pennsylvania State University in Dr. John Golbeck's Lab. Professor Golbeck is a collaborator on this research and has allowed us the use of his instruments. Several of instrumental set ups are home built or highly specialized. The kinetic back reaction experiment uses two lasers to monitor the rereduction of the P700+ cofactor. The excitation pump pulses a 532 nm (green) beam which excites the PSI complex. The probe laser at 811 nm (deep red) monitors the reduction of P700+ as a function of time.

 

Figure 3.  P700+ reduction kinetics on PS I complexes isolated from wild type, menB18, and menB18 grown with 1-CH3NH-AQ.  Lifetimes are 100 ms, 3 ms, and 67 ms, respectively. Laser-flash induced optical transient was measured at 811 nm.  Time is plotted on a logarithmic scale, in which deviation from the horizontal represents a kinetic phase.  Growth conditions for the two mutant strains were as presented in the growth experiments all grown under normal light conditions (40 mE).  Sample conditions:  50 mg/mL chlorophyll in 50 mM Tris, pH 8.2, 0.03% n-dodecyl-b-D-maltoside, 10 mM ascorbate, and 5 mM DCPIP in a 1 x 1-cm fluorescence cuvette,  Excitation wavelength, 532 nm, excitation energy, 1.4 mJ.  A 300 MHz bandwidth was used in the preamplifier to recover kinetics in the microsecond time range.

Spin polarized transient X-band EPR is an advanced technique performed at Brock University (Ontario, Canada) by Dr. van der Est. The analysis of the data shows that the anthraquinones added in vivo to the growth culture incorporate into PSI. The in vivo menB + methyl amino-AQ spectrum is comparable to the wild type in vitro experiment where the AQ was added to PSI through chemical means (Figure 4). Note that the wild type and menb spectra are distinctly different. This is supporting evidence that AQ is properly incorporated into PSI and functions like a native quinone.

 

Figure 4.  Spin-polarized transient X-band Electron Paramagnetic Resonance spectra of PS I from wild type (green), wild type organic solvent extracted PS I reconstituted with AQ (black), menB18 (red), and menB18 supplemented with 1-CH3NH-AQ in vivo (blue)

 

References

Johnson, T. W. and J. H. Golbeck, Biological Incorporation of Foreign Quinones into the A1 site of Photosystem I, CRC Handbook of Organic Photochemistry and Photobiology, 2 nd edition, Eds. W. M. Horspool and F. Lenci, 119, 2003.

Johnson, T. W ., B. Zybailov, A. D. Jones, J. H. Golbeck, and P. R. Chitnis, Recruitment of a foreign quinone into the A1 site of photosystem I. IV. In vivo replacement of the native quinone in the phylloquinone-less mutants of Synechocystis sp. PCC 6803 by externally supplied naphthoquinones, J. Biological Chemistry, 276, 39512-39521, 2001.

Puskar, Y. N. Karyagina I. Stehlik, D. Brown, S. van der Est, A, Recruitment of a foreign quinone into the A 1 site of Photosystem I. Consecutive forward electron transfer from A 0 to A 1 to Fx with anthraquinone in the A 1 site as studied by transient EPR, J. Biological Chemistry.

Antonkine, M. L., D. Bentrop, I. Bertini, C. Luchinat, G. Shen, D. A. Bryant, D. Stehlik, and J. H. Golbeck. 2000. Paramagnetic 1H NMR spectroscopy of the reduced, unbound photosystem I subunit PsaC: sequence-specific assignment of contact-shifted resonances and identification of mixed- and equal-valence Fe-Fe pairs in [4Fe-4S] centers FA- and FB-. J Biol Inorg Chem. 5:381-92.

Biggins, J. 1990. Evaluation of selected benzoquinones, naphthoquinones, and anthraquinones as replacements for phylloquinone in the A1 acceptor site of the photosystem I reaction center. Biochemistry. 29:7259-64.

Biggins, J., and P. Mathis. 1988. Functional role of vitamin K in photosystem I of the cyanobacterium Synechocystis 6803. Biochemistry. 27:1494-500.

Brettel, K. 1988. Electron transfer from A1- to an iron-sulfur center with t1/2 = 200 ns at room temperature in photosystem I. Characterization by flash absorption spectroscopy. In FEBS Lett. 93-8.

Brettel, K. 1997. Electron transfer and arrangement of the redox cofactors in photosystem I. Biochim. Biophys. Acta. 1318:322-373.

Chitnis, P. R. 1996. Photosystem I.

Chitnis, V. P., Y. S. Jungs, L. Albee, J. H. Golbeck, and P. R. Chitnis. 1996. Mutational analysis of photosystem I polypeptides. Role of PsaD and the lysyl 106 residue in the reductase activity of the photosystem I. J Biol Chem. 271:11772-80.

Daruwala, R., O. Kwon, R. Meganathan, and M. E. Hudspeth. 1996. A new isochorismate synthase specifically involved in menaquinone (vitamin K2) biosynthesis encoded by the menF gene. FEMS Microbiol Lett. 140:159-63.

Golbeck, J. H. 1993. Shared thematic elements in photochemical reaction centers. Proc Natl Acad Sci U S A. 90:1642-6.

Itoh, S., and M. Iwaki. 1989. Vitamin K sub(1) (phylloquinone) restores the turnover of FeS centers in the ether-extracted spinach PS I particles. FEBS LETT. 243:47-52.

Itoh, S., M. Iwqaki, and I. Ikegami. 1987. Extraction of vitamin K-1 from photosystem I particles by treatment with diethyl ether and its effect on the A1- EPR signal and system I photochemistry. Biochim. Biophys. Acta. 893:508-516.

Iwaki, M., and S. Itoh. 1994. Reaction of reconstituted acceptor quinone and dynamic equilibration of electron transfer in the photosystem I reaction center. Plant Cell Physiol. 35:983-993.

Johnson, T. W., G. Shen, B. Zybailov, D. Kolling, R. Reategui, S. Beauparlant, I. R. Vassiliev, D. A. Bryant, A. D. Jones, J. H. Golbeck, and P. R. Chitnis. 2000. Recruitment of a foreign quinone into the A(1) site of photosystem I. I. Genetic and physiological characterization of phylloquinone biosynthetic pathway mutants in Synechocystis sp. pcc 6803. J Biol Chem. 275:8523-30.

Kruip, J., P. R. Chitnis, B. Lagoutte, M. Rogner, and E. J. Boekema. 1997. Structural organization of the major subunits in cyanobacterial photosystem 1. Localization of subunits PsaC, -D, -E, -F, and -J. J Biol Chem. 272:17061-9.

Kumazaki, S., M. Iwaki, I. Ikegami, H. Kandori, K. Yoshihara, and S. Itoh. 1994. Rates of primary electron transfer reactions in the photosystem I reaction center reconstituted with different quinones as the secondary acceptor. J. Phys. Chem. 98:11220-11225.

Malkin, R. 1986. On the function of two vitamin K molecules in the PSI electron acceptor complex. FEBS Lett. 208:343-346.

Nitschke, W., and A. Rutherford. 1991. Photosynthetic reaction centres: Variations on a common structural theme? Trends Biochem. Sci. 16:241-245.

Nugent, J. H. 1996. Oxygenic photosynthesis. Electron transfer in photosystem I and photosystem II. Eur. J. Biochem. 237:519-531.

Palaniappan, C., V. Sharma, M. E. Hudspeth, and R. Meganathan. 1992. Menaquinone (vitamin K2) biosynthesis: evidence that the Escherichia coli menD gene encodes both 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase and alpha-ketoglutarate decarboxylase activities. J Bacteriol. 174:8111-8.

Rustandi, R. R., S. W. Snyder, L. L. Feezel, T. J. Michalski, J. R. Norris, M. C. Thurnauer, and J. Biggins. 1990. Contribution of vitamin K1 to the electron spin polarization in spinach photosystem I. Biochemistry. 29:8030-2.

Schoeder, H. U., and W. Lockau. 1986. Phylloquinone copurifies with the large subunit of photosystem I. FEBS Lett. 199:23-27.

Semenov, A. Y., I. R. Vassiliev, A. van Der Est, M. D. Mamedov, B. Zybailov, G. Shen, D. Stehlik, B. A. Diner, P. R. Chitnis, and J. H. Golbeck. 2000. Recruitment of a Foreign Quinone into the A1 Site of Photosystem I. Altered Kinetics of Electron Transfer in Phylloquinone Biosynthetic Pathway Mutants Studied by Time-Resolved Optical, EPR and Electrometric Techniques. J Biol Chem. 275:23429-23438.

Setif, P., I. Ikegami, and J. Biggins. 1987. Light-induced charge separation in Photosystem I at low temperature is not influenced by vitamin K-1. Biochim. Biophys. Acta. 894:146-56.

Sharma, V., M. E. Hudspeth, and R. Meganathan. 1996. Menaquinone (vitamin K2) biosynthesis: localization and characterization of the menE gene from Escherichia coli. Gene. 168:43-8.

Sharma, V., R. Meganathan, and M. E. Hudspeth. 1993. Menaquinone (vitamin K2) biosynthesis: cloning, nucleotide sequence, and expression of the menC gene from Escherichia coli. J Bacteriol. 175:4917-21.

Sharma, V., K. Suvarna, R. Meganathan, and M. E. Hudspeth. 1992. Menaquinone (vitamin K2) biosynthesis: nucleotide sequence and expression of the menB gene from Escherichia coli. J Bacteriol. 174:5057-62.

Suvarna, K., D. Stevenson, R. Meganathan, and M. E. Hudspeth. 1998. Menaquinone (vitamin K2) biosynthesis: localization and characterization of the menA gene from Escherichia coli. J Bacteriol. 180:2782-7.

Takahashi, Y., K. Hirota, and S. Katoh. 1985. Multiple forms of P700-chlorophyll a-protein complexes from Synechococcus sp.: The iron, quinone, and carotenoid contents. Photosynth. Res. 6:183-192.

Xu, Q., Y. S. Jung, V. P. Chitnis, J. A. Guikema, J. H. Golbeck, and P. R. Chitnis. 1994. Mutational analysis of photosystem I polypeptides in Synechocystis sp. PCC 6803. Subunit requirements for reduction of NADP+ mediated by ferredoxin and flavodoxin. J. Biol. Chem. 269:21512-21518.

Yu, J., L. B. Smart, Y. S. Jung, J. Golbeck, and L. McIntosh. 1995. Absence of PsaC subunit allows assembly of photosystem I core but prevents the binding of PsaD and PsaE in Synechocystis sp. PCC6803. Plant Mol Biol. 29:331-342.

Yu, L., J. Zhao, W. Lu, D. A. Bryant, and J. H. Golbeck. 1993. Characterization of the [3Fe-4S] and [4Fe-4S] clusters in unbound PsaC mutants C14D and C51D. Midpoint potentials of the single [4Fe-4S] clusters are identical to FA and FB in bound PsaC of photosystem I. Biochemistry. 32:8251-8.

Zybailov, B., A. van der Est, S. G. Zech, C. Teutloff, T. W. Johnson, G. Shen, R. Bittl, D. Stehlik, P. R. Chitnis, and J. H. Golbeck. 2000. Recruitment of a foreign quinone into the A(1) site of photosystem I. II. Structural and functional characterization of phylloquinone biosynthetic pathway mutants by electron paramagnetic resonance and electron-nuclear double resonance spectroscopy. J Biol Chem. 275:8531-9.

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